B
Bioactive Conformation
Definition: The conformation adopted by a ligand when bound to its target.
Context: Guides conformational constraint strategies to improve selectivity.
Example: Locked isostere mimicking bound pose.
Related Terms: Conformation, Pharmacophore.
Reference: Silverman (2014).
C
Conformation 
Paired Concept:
Configuration Definition: Different spatial arrangements generated by rotation about single bonds.
Context: Bioactive conformation often dictates receptor binding and SAR.
Example: Anti vs gauche conformers of butane.
Related Terms: Conformational Isomerism, Bioactive Conformation.
Reference: Clayden et al., Organic Chemistry (2012).
Conformational Constraint
Definition: Structural modification limiting molecular flexibility.
Context: Improves binding affinity and selectivity.
Example: Locked nucleic acids (LNAs).
Related Terms: SAR, Pharmacophore.
Reference: Silverman, Drug Design (2014).
Conformational Isomer (Conformer)
Definition: Isomers differing only by rotation about single σ-bonds without bond breaking.
Context: Conformational analysis is essential in understanding stability, reactivity, and bioactive geometry.
Example: Chair and boat forms of cyclohexane.
Related Terms: Conformer; Conformation; Eclipsed; Gauche.
Reference: Clayden, J., Greeves, N., Warren, S. & Wothers, P. Organic Chemistry. Oxford University Press, 2012.
Conformational Isomerism
Paired Concept:
Atropisomerism
Definition: Interconversion between isomers via rotation about σ-bonds.
Context: Conformational preferences control stereochemical outcomes and binding.
Example: Chair vs boat cyclohexane.
Related Terms: Conformation, Stereoelectronic Effect.
Reference: Clayden et al. (2012).
E
Eclipsed Conformation
Definition: A conformation where substituents on adjacent carbons align with each other, maximizing torsional strain.
Context: Less stable than staggered arrangements due to electron repulsion.
Example: Eclipsed ethane has higher energy than the staggered form.
Related Terms: Conformer; Gauche; Torsional Strain.
Reference: Eliel & Wilen (1994).
T
Twist-Boat Conformation
Definition: A less strained intermediate form of cyclohexane between the boat and chair conformations.
Context: Has lower energy than pure boat form; relevant in conformational equilibria.
Example: Cyclohexane adopts twist-boat at high energy transition states.
Related Terms: Boat Conformation; Chair Conformation; Conformational Isomer.
Reference: Eliel & Wilen (1994).
